Wednesday, April 7, 2010
More on Bioinformatics
It encompasses research, development and application of computational tools and aims at expanding the use of biological, medical, behavioural, or health data. Hence data is acquired, stored, organized, archived and then analysed. Bio informatics relies on statistical methods.
Specialized work is carried on in drugs research, agrochemicals, hybridization, plastics and petroleum derivatives, environmental remediation etc.
Nature of Work
Bio informatics performs two critical roles : develops IT tools embodying novel algorithms and analytical techniques, or applies existing tools to achieve new insights into molecular biology in testing, documentation, running operating procedures and database administration, programming, software development, algorithm creation and scientific visualization. Bio informatics can be applied to all areas of life sciences and other fields like energy and textiles, pharmaceuticals and agriculture. Bio informatics is used for treatment of genetic diseases. Knowledge about the method in which drugs work at the genetic level finds applications in the treatment of cancer as well as infectious diseases like AIDS. Bio-informatics also throws light on toxicogenomics, a speciality that tries to find an answer as to why drugs work better on some patients than on others. Using bio informatics, drugs can be developed much faster to facilitate as well as accelerate the treatment of diseases.
The experiment on cloning is also an area of bio-informatics.
Study & Training
Bio informatics course covers : Introduction to genetics, molecular and cell biology, biochemistry, biotechnology, microbiology, evolutionary biology ; fundamentals of bio informatics ; branches and application areas of bio informatics ; use of software tools and databases available on the web ; Sequence analysis ; Protein modeling.
In addition to the above, depending on the standards of the institution, some introduction is also made in areas that influence the bio informatics :
Deoxyribose Nucleic Acid (DNA) Fingerprinting and computer science, MS Office, Linux, HTML and Perl. Students of bio informatics are expected to be proficient with knowledge of Java, Unix, C, C++, RDBMS such as Oracle and Sybase, CORBA, Perl, CGI and web scripting is required at the IT end.
Graduates in Computer Science, genetics, biochemistry, molecular biology, mathematics, physical chemistry, pharmaceuticals, floriculture, statistics, electrical engineering, biotechnology or organic chemistry are suitable for this programme.
The Government of India through the Department of Biotechnology is also taking up certain initial steps with regard to bio informatics education in India. The Department has drafted a National Bio informatics Policy 2002 and has collaborated with IIT Delhi to launch a two-year M Tech. Course. More than 70 universities are connected through a network for a first ever supercomputing facility in the country for Bio informatics and computational biology.
Centre for Bio technical Technology in collaboration with a private computer-training institute has launched a one-year postgraduate diploma course with an assurance that fifty per cent of the students would be absorbed in various projects. The qualifications for eligibility are M.Sc. in life science, MBBS, B.Tech or MCA.
Sunday, November 15, 2009
INSTITUTES IN INDIA OFFERING BIOINFORMATICS
BIC at
Is among the pioneers of bioinformatics education in the nation.
BIC was set up in 1989 funded under the Biotechnology Information Systems Programme (BTIS) of DBT.
The center, which was functioning at the
The centre is well equipped with all the necessary facilities in terms of hardware, software, networking, etc.
BIC-JNU is offering :
- one-year post MSc Diploma in Bioinformatics
- PhD program in bioinformatics.
Computational genomics is the thrust area of BIC.
Bioinformatics Institute of
This institute is engaged in education and training services in bioinformatic sciences.
· It offers three PG Diploma courses via distance learning program to graduates, biologists, software professionals and professionals in other related fields.
These courses are provided through local study centers in cheminformatics, bioinformatics and biomedical informatics all over the country.
The total number of students enrolled in BII’s regular and distant learning programs has reached up to 5,000.
The courseware and methodologies of BII have been developed on par with international standards in consultation with industry experts and academicians.
It plans to set up of a state-of-the-art development center to provide a world class R&D facility to budding scientists.
The R&D areas of the organization are wide ranging from biotech to pharmaceuticals and medicine.
The institute assists in technology outsourcing, identification of joint ventures and marketing tie-ups for various products and services of pharmaceutical and other product organizations.
CBT at
The Center for Biotechnology (CBT) at
Started in 1987 with funds from the University Grants Commission, Department of Biotechnology and Anna Univesity, CBT has played a pioneering role in biotech education.
In 1992, the center started a B Tech program in industrial biotechnology. It is supported by a large consortium of industries who have set up a corpus fund to the run the program. Recently, CBT got a boost with more funds donated by a well-known biotech company, Amersham Biosciences.
Two more positions of lecturers were created using these funds.
· CBT also offers a two-year M Tech (biotech) and PhD programs in biotechnology. Students are admitted through an entrance examination.
Center for DNA Fingerprinting and Diagnostics:
This is an autonomous institution supported by the Department of Biotechnology (DBT). It is
CDFD is now poised to initiate basic research in fields relevant to its objectives.
CDFD is also the bioinformatics national node for the European Molecular Biology network (EMBnet).
The node currently provides bioinformatics services in the form of browsing biomolecular sequence databanks, macromolecular structure databank, genome and other useful databases.
It has some unique features in its course curriculum. This special academic program is a result of successful alliance between
VG Vaze college, Mumbai:
Kelkar Education Trust’s VG Vaze College offers degree-level courses in biotechnology. The college has a state-of-the-art biotechnology lab and a scientific research center. The center under takes research in areas relating to medical, aromatics, cosmetics and environmental biotechnology. DST and
Founded by Rai Foundation, this group has spread its educational arms across the nation with campuses in
RGCB, Kerala:
Rajiv Gandhi Centre for Biotechnology ( RGCB ) is an autonomous research institute that functions under the umbrella of Science, Technology and Environment department of the Government of Kerala. Established in its present form in 1994, RGCB has come to occupy an important position among the research institutes of the country devoted to research in the cutting edge areas of modern biology and biotechnology. It occupied a new building in January 2002. With the support of the DBT it has established research facilities required for carrying out modern biological research. Currently, the research activities are being carried out in seven major divisions: infectious diseases, plant molecular biology, environmental biotechnology, molecular human genetics, neurobiology, cancer biology and molecular endocrinology.
East West Institute of Technology:
Recognized by the Government of Karnataka, affiliated to
The East West Educational institutions have earned very good reputation for providing meaningful education and for maintaining high standards—both in professional and nonprofessional courses.
East West offers Bachelor of Engineering courses in biotechnology engineering. This is an eight-semester course, affiliated to
Edubiotech:
Edubiotech is a technology driven organization, providing world-class biotech technical support to educational institutions and corporate sectors. Edubiotech accelerates innovative ideas by providing good quality R&D and lab facilities. Each one has a place and is given the opportunity to excel in their field of interest.
Oxford Group,
The Oxford Group of Educational Institutions is a group that yearns at strengthening the concept of value based education. There are 22 educational institutions in all the branches of this institution. The Group has a separate
RK Institute of Management and Computer Science
RK Institute of Management and Computer Science, recognized by the Government of Karnataka, affiliated to
Wageningen,
SS Infotech,
SS Infotech started in the year 1999 as a non-profitable organization to provide high quality education to less fortunate students at an economical cost. Started with MSc (IT), BSc (IT), MBA and BBA courses, presently it is offering one year PG diploma in bioinformatics through Bioinformatics Institute of India, Noida. The objective of the course is to provide adequate knowledge and training to the student with hands on experience in the field of bio-informatics. The institute has developed a course keeping in mind the requirements of the industries and to equip the students with the latest advances in the field of bioinformatics. The institute also offers correspondence courses in biomedical-informatics, bioinformatics and cheminformatics.
Biotech Education Services &Training (BEST),
BEST was started as a company incorporated to undertake activities in imparting quality research and training in biotechnology. The objective of BEST is to promote quality hands on training program in biotech education. Besides training the company has successfully forged into contract research services, protocol development, water analysis and waster water management. BEST is equipped with state of art facilities, competent and dedicated technical manpower. Its network has helps the students in placements and career counseling. It offers one-year PG diploma, short-term course of 10-50 days and advanced diploma courses of three months duration in biotechnology.
Wednesday, November 11, 2009
Sunday, November 8, 2009
ELECTRONIC PCR
BLAST
Tuesday, November 3, 2009
Masters programes in various Bioinfo fields(United States)
Masters programes in various Bioinfo fields
- California State University Channel Islands Camarillo,
- George Mason University Fairfax,
- VA College of Science
- The George Washington University Washington, DC Program in Genomics, Proteomics, and Bioinformatics
- Georgia Institute of Technology Atlanta, GA School of Biology
- Iowa State University of Science and Technology Ames, IA Bioinformatics and Computational Biology Program
- The Johns Hopkins University Baltimore, MD Part-time Program in Bioinformatics
- The Johns Hopkins University Baltimore, MD Program in Computer Science
- North Carolina State University Raleigh, NC Program in Bioinformatics
- Oregon Health & Science University Portland, OR Department of Medical Informatics and Clinical Epidemiology
- Polytechnic Institute of NYU Brooklyn, NY Major in Bioinformatics University of California, Santa Cruz Santa Cruz, CA Program in Bioinformatics
- University of Illinois at Urbana–Champaign Urbana,
- IL Graduate School of Library and Information Science
- University of Southern California Los Angeles, CA Programs in Molecular Biology
- The University of Toledo Toledo, OH Program in Bioinformatics and Proteomics/Genomics
- University of Utah Salt Lake City, UT Department of Biomedical Informatics
- Virginia Commonwealth University Richmond, VA Centre for the Study of Biological Complexity
- Clemson University Clemson, SC School of Computing Clemson University Clemson, SC Program in Biochemistry and Molecular Biology Clemson University Clemson,SC Program in Genetics
- Columbia University New York, NY Graduate School of Arts and Sciences at the College of Physicians and Surgeons
- New York Medical College Valhalla, NY Program in Health Informatics Stony Brook University,
- State University of New York Stony Brook, NY Department of Biomedical Engineering
- Boston University Boston, MA Intercollegiate Program in Bioinformatics
- Brandeis University Waltham, MA Bioinformatics Program
- California State University, Dominguez Hills Carson, CA Department of Biology
Classes in Bioinformatics and Computational Biology
LIST OF UNIVERSITIES OFFERING DEGREES IN BIOINFORMATICS
- Australia
- South Australia
- Bachelor's Program in Bioinformatics at Flinders University
- The International Office
Flinders University, GPO Box 2100, Adelaide SA 5001
Tel (+ 618) 8201 2727
Fax (+ 618) 8201 3177
Email: Intl.Office@flinders.edu.au - Europe
- Austria
- Bioinformatics at the Institute of Biomedical Engineering, Graz University of Technology
- Denmark
- Technical University of Denmark, Center for Biological Sequence Analysis
- Finland
- Helsinki University, Graduate School in Computational Biology, Bioinformatics, and Biometry
- Germany
- Univ.of Bielefeld, Naturwissenschaftliche Informatik
- University of Tuebingen, Bioinformatics
- Norway
- University of Bergen, Bioinformatics at the Department of Informatics
- Sweden
- Gothenburg
- Chalmers University Masters Program in Bioinformatics
- United Kingdom
- University of Exeter - MSc, Diploma and Certificate in Bioinformatics
- For Graduate admissions (Computer Science): Contact Sheila Watkin, Department of Computer Science, Harrison Building, University of Exeter EX4 4QF
- Telephone: (+44)-(0)1392-264061
- Fax: (+44)-(0)1392-264067
- E-mail: dcs-gradinfo@ex.ac.uk
- University of Leeds, M.Res. in Bioinformatics
- In all cases, you should submit a full application, including a completed application form, a full C.V. and covering letter to our Graduate School. Your letter should highlight your interest in any of the funding sources below. The application form and submission details are available from the Graduate Office. The telephone and FAX numbers are respectively (0/+44) 113 343 1417 and (0/+44) 113 343 1407; alternatively e-mail.
- University of Liverpool, M. Sc. in Biosystems and Informatics
- If you need details regarding applications for next year please contact Dr P Miller (pmiller@liv.ac.uk)
- University of Manchester, Masters Program
- Check the On-line Tutorial, BioActivity, an interactive exercise that aims to provide a taste of Bioinformatics resources around the world.
- University of Nottingham, Master of Philosophy in Molecular Biology with Bioinformatics
- University of York, MRes in Bioinformatics
- North America
- Canada
- Ontario
- Waterloo University,Graduate Program in Bioinformatics
- Quebec
- University of Montreal, Biologie informatique et thÈorique
- Vacouver
- Bioinformatics Training Program for Health Research
- United States
- California
- Keck Graduate Institute, Professional Masters in Applied Biosciences
- Stanford University Biomedical Informatics Program
- University of California-Irvine Biomedical Informatics program
- University of California-Los Angeles Bioinformatics
- University of California-San Diego
- Computational Neurobiology Graduate Program, Division of Biology
- Bioinformatics and Computational Biology, Department of Bioengineering
- University of California-Santa Cruz
- UCSC Bioinformatics
- BS curriculum
- University of California-San Francisco Program in Medical Information Sciences
- University of Southern California, Center for Computational and Experimental Genomics
- San Francisco State University
- University of California-Davis Medical Informatics Graduate Program
- University of California-Berkeley
- Program in Genomics and Computational Biology
- Colorado
- University of Colorado at Denver
- Certificate for Computational Biology, Center for Computational Biology
- M.S. in Computer Science with Computational Biology Option
- M.S. in Applied Mathematics with Computational Biology Option
- University of Colorado School of Medicine
- Ph.D. in Analytical Health Sciences - Bioinformatics Track
- Connecticut
- Bioinformatics at Yale
- Delaware
- Bioinformatics at CAPSAL, University of Delaware
- Florida
- Florida State University program in Computational Biology
- Florida International University
- Georgia
- Bioinformatics program at Georgia Tech University
- Illinois
- Bioinformatics at University of Illinois at Chicago
- University of Illinois at Urbana-Champaign
- Center for Biophysics and Computational Biology
- W.M. Keck Center for Bioinformatics
- University of Chicago
- Northern Illinois University
- Indiana
- Bioinformatics MS degree at Indiana University School of Informatics
- Computatioanl Biology at Purdue University
- Iowa
- Bioinformatics and Computational Biology at Iowa State University
- Maryland
- Computational Biology at Johns Hopkins University
- University of Maryland
- Massachusetts
- Boston University Bioinformatics Program
- Harvard University Computational Biology Program (part of Biophysics)
- MIT Department of Biology
- MIT Whitehead Center for Genome Research
- MIT Whitehead Institute for Biomedical Research
- Bioinformatics masters degree at Northeastern University
- Michigan
- University of Michigan:
- Graduate Program in Bioinformatics
- Medical School
- Computational Biophysics
- Minnesota
- University of Minnesota Graduate Program in Bioinformatics
- Missouri
- Computational Molecular Biology Program at Washington University in St. Louis
- Bioinformatics at University of Missouri at Columbia
- Nebraska
- Bioinformatics graduate studies at The University of Nebraska
- New Jersey
- Graduate Studies in Computational Molecular Biology at Rutgers University
- Genomics and Computational Biology at Princeton
- NJIT Sloan Masters in Computational Biology
- University of Medicine and Dentistry of New Jersey
- New York
- University of Albany
- Rockefeller University Bioinformatics and Computational Biology Program
- Cornell University Genomics Program
- Bioinformatics and Molecular Biology program at Rensselaer
- Computational Biology at NYU
- Columbia University:
- Department of Computer Science
- Department of Medical Informatics
- Department of Biochemistry and Molecular Biophysics
- Rochester Institute of Technology
- State University of New York (SUNY) Buffalo
- Center for Excellence in Bioinformatics
- Center for Computational Research
- North Carolina
- University of North Carolina at Chapel Hill, Program in Bioinformatics and Computation Biology
- North Carolina State University Genomics
- North Carolina State University Bioinformatics
- Clemson University, Genomics Institute
- Duke University Center For Bioinformatics & Computational Biology
- Ohio
- Bioinformatics and Computational Biology at Ohio State University
- Bioinformatics at University of Cincinnati
- Pennsylvania
- Keck Center for Advanced Training in Computational Biology
- Undergraduate Computational Biology Program at Carnegie Mellon University
- Merck Computational Biology and Chemistry Program
- Carnegie Mellon University Professional Masters in Computational Biology
- University of Pennsylvania Center for Bioinformatics
- Graduate Bioinformatics at the University of the Sciences in Philadelphia
- Penn State University Center for Computational Biology
- South Carolina
- Clemson University, Genomics Institute
- Texas
- W.M. Keck Center for Computational Biology at Rice University
- Computational Biology at Baylor College of Medicine
- Texas A&M University Bioinformatics Working group
- Center for Computational Biology and Bioinformatics, at the University of Texas at Austin
- University of Texas, El Paso
- Tennessee
- U of Memphis MS in Bioinformatics
- University of Tennessee, Knoxville, Oak Ridge National Labs
- Biomedical Informatics at Vanderbilt University
- Virginia
- Bioinformatics and Computational Biology Ph.D. Program at George Mason
- Graduate Options in Bioinformatics at Virginia Tech
- Washington
- Graduate Program in Computational Molecular Biology Fred Hutchinson Cancer Research Center, University of Washington
- Dept. of Molecular Biotechnology, University of Washington
- Wisconsin
- University of Wisconsin-Madison, Computation and Informatics in Biology and Medicine Training Program
- Medical College of Wisconsin / Marquette University
- South Australia
